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1 Nelson, DonaldConstraint Jacobians for constant-time inverse kinematics and assembly optimizationAn algorithm for the constant-time solution of systems of geometric constraint equations is presented in this work. constraint equations and their Jacobians may be used in conjunction with other numerical methods to solve for a variety of kinematics, dynamics, and assembly optimization problems. The...Constant-time; Inverse kinematics; Constraint Jacobians1998
2 Gesteland, Raymond F.; Krapcho, Karen J.; Talbot, Phil; Thulin, CraigCrystallization of the MS2 translational repressor alone and complexed to bromouridineThe coat protein from the MS2 bacteriophage plays a dual role by encapsidating viral RNA and also by binding RNA as a translational repressor. In order to study the isolated dimer in a conformation not influenced by capsid interactions, a mutant molecule was crystallized that is defective in capsid ...Crystallization; RNA Bacteriophage; RNA Hairpin; Translational Repressor1995
3 Horch, Kenneth W.; Christensen, Douglas A.Accelerated 4-year bachelors/masters degree program in biomedical engineeringIn response to the need for providing advanced engineering education in a shorter time period than is currently possible by traditional curricula, we have created an Accelerated Dual Degree program in biomedical engineering. The purpose of this pilot program is to attract the brightest students, g...Accelerated dual-degree program2002
4 Horch, Kenneth W.; Christensen, Douglas A.Accelerated 4-year bachelors/masters degree program in biomedical engineeringIn response to the need for providing advanced engineering education in a shorter time period than is currently possible by traditional curricula, we have created an Accelerated Dual Degree program in biomedical engineering. The purpose of this pilot program is to attract the brightest students, g...Accelerated; Dual-degrees; Education2002
5 Henderson, Thomas C.Zo: A framework for autonomous agent behavior specification and analysisWe describe a framework for the specification and analysis of autonomous agents1 . In general, such agents require several levels of behavioral specifications, including: low-level reflex actions, mid-level controllers to deal with the physical aspects of the world, and highlevel representations for...Z-Infinity; Autonomous agents; Behavior1990
6 Henderson, Thomas C.; Sikorski, ChristopherSymmetry: a basis for sensorimotor reconstructionGiven a set of unknown sensors and actuators, sensorimotor reconstruction is achieved by exploiting relations between the sensor data and the actuator control data to determine sets of similar sensors, sets of similar actuators, necessary relations between them, as well as sensorimotor relations ...sensorimotor reconstruction; sensor data; actuator control data2011
7 Gesteland, Raymond F.; Atkins, John F.; Tuohy, Therese M.Uninterrupted translation through putative 12-nucleotide coding gap in sequence of carA: business as usualPrevious work of others reported an untranslated stretch of 12 nucleotides in the 5' coding sequence of carA from Pseudomonas aeruginosa. However, N-terminal protein sequencing of carA-lacZ translational fusions shows that these 12 nucleotides are normally translated in a continuous triplet manner, ...Base Sequence; Protein Biosynthesis; Sequence Deletion1994
8 Gesteland, Raymond F.; Atkins, John F.; Weiss, Robert B.Slippery runs, shifty stops, backward steps and forward hops: -2, -1, +1, +2, +5 and +6 Ribosomal frameshiftingFrameshift mutations frequently express residual levels of gene activity; that is, they are often leaky. This leakiness can be used as a tool to define the functional components that affect the reading frame during gene expression. Recent technological advances in the capability to efficiently bu...Molecular Sequence Data; Mutation; RNA, Transfer; Frameshifting1987
9 Gesteland, Raymond F.; Atkins, John F.Evolutionary specialization of recoding: frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1An autoregulatory translational shift to the +1 frame is required for the expression of ornithine decarboxylase antizyme from fungi to mammals. In most eukaryotes, including all vertebrates and a majority of the studied fungi/yeast, the site on antizyme mRNA where the shift occurs is UCC-UGA. The me...Antizyme; ODC; Polyamines; Frameshifting2006
10 Christensen, Douglas A.; Horch, Kenneth W.Experience with the first three years of an accelerated dual-degree program in biomedical engineeringOur Department of Bioengineering has instituted a pilot program aimed at helping a select group of highly qualified students obtain both bachelor's and master's degrees in an accelerated timeframe-approximately four years from the beginning of their university studies. A key element of this progra...Accelerated; Dual-degrees; Education2004
11 Furse, Cynthia M.Teaching and learning combined (TLC)Most professors have to lean a LOT. Every day, it seems, there IS something that we need that we don't know. So what do you do to lean this new information? Perhaps you hit the Web or the library, find a tutorial, a textbook, or a paper, and give it a little reading time in between a 12:00 class an...2003
12 Sobh, Tarek M.A survey on sensor classifications for industrial applicationsThe importance of sensors in industrial applications is a result of the introduction of many robotics, automation, and intelligent control techniques into factory floors. Research and improvements need to be continuously performed to meet the challenges in automation and manufacturing applications i...Sensor classifications; Industrial applications; Sensors1995
13 Rajamani, RajAdvances in discrete element method application to grinding millsDiscrete element method (DEM) has made significant impact in the design and operation of grinding mills. The internal charge motion of grinding balls and ore can be readily examined. As a result, this method enables one to design and examine mill internals via simulation. This manuscript details es...2014-01-01
14 Bedrov, Dmitro; Smith, Grant D.Anomalous pressure dependence of the structure factor in 1,4-polybutadiene melts: a molecular dynamics simulation studyNeutron scattering has shown the first diffraction peak in the structure factor of a 1,4-polybutadiene melt under compression to move to larger q values as expected but to decrease significantly in intensity. Simulations reveal that this behavior does not result from loss of structure in the polymer...Polymer melts; 1, 4-polybutadiene melts; Pressure; Structure factor2004-07
15 Gesteland, Raymond F.; Atkins, John F.; Ingram, Jennifer A.; Kelly, Paul J.; Grentzmann, GuidoDual-luciferase reporter system for studying recoding signalsA new reporter system has been developed for measuring translation coupling efficiency of recoding mechanisms such as frameshifting or readthrough. A recoding test sequence is cloned in between the renilla and firefly luciferase reporter genes and the two luciferase activities are subsequently measu...Amino Acid Sequence; Genes, Reporter; HIV; Antizyme; Translation1998
16 Smith, Philip J.State space sensitivity to a prescribed probability density function shape in coal combustion systems: joint β-PDF versus clipped Gaussian PDFThe turbulent transport of three coal off-gas mixture fractions is coupled to a prescribed joint //-probability- density-function (//-PDF) mixing model. This physical transport and subgrid joint //-PDF mixing model is used to explore the incorporation of coal off-gas compositional disparities betwe...Off-gas stream; β-PDF; Char oxidation2000
17 Henderson, Thomas C.A survey of dextrous manipulationThe development of mechanical end effectors capable of dextrous manipulation is a rapidly growing and quite successful field of research. It has in some sense put the focus on control issues, in particular, how to control these remarkably humanlike manipulators to perform the deft movement that we t...Dextrous manipulation1986
18 Furse, Cynthia M.; Cotter, Neil E.Challenges in curriculum adaptation across institutions of higher education: international and national student transferThe challenges associated with student transfer between institutions of higher education are investigated. The Utah System of Higher Education (USHE) requires that undergraduate courses from non-ABET accredited institutions are recognized across public universities and colleges in Utah Based on empi...2006
19 Gesteland, Raymond F.; Atkins, John F.; Baranov, Pavel V.P-site tRNA is a crucial initiator of ribosomal frameshiftingThe expression of some genes requires a high proportion of ribosomes to shift at a specific site into one of the two alternative frames. This utilized frameshifting provides a unique tool for studying reading frame control. Peptidyl-tRNA slippage has been invoked to explain many cases of programmed ...Translation; Recoding; Kinetic Model; Frameshifting; Ribosome2004
20 Smith, Grant D.; Bedrov, Dmitro; Borodin, OlegStructural relaxation and dynamic hetrogeneity in a polymer melt at attractive surfacesMolecular dynamics simulations of polymer melts at flat and structured surfaces reveal that, for the former, slow dynamics and increased dynamic heterogeneity for an adsorbed polymer is due to densification of the polymer in a surface layer, while, for the latter, the energy topography of the sur...Polymer melts; Structural relaxation; Dynamic heterogeneity; Attractive surfaces; Surface energy topography; Polymer densification2003-06
21 Stringfellow, Gerald B.Simulation of self-assembled compositional core-shell structures in In xGa 1-xN nanowiresWe report the simulation of compositional core-shell structure formation in epitaxial InGaN nanowires (NWs) and its dependence on kinetic growth mode and epitaxial relation to substrate, based on atomistic-strain-model Monte Carlo simulations. On a lattice mismatched substrate, the layer-by-layer gr...2012-01-01
22 Henderson, Thomas C.Monte Carlo sensor networksBiswas et al. [1] introduced a probabilistic approach to inference with limited information in sensor networks. They represented the sensor network as a Bayesian network and performed approximate inference using Markov Chain Monte Carlo (MCMC). The goal is to robustly answer queries even under no...Monte Carlo sensor networks; Markov Chain Monte Carlo; MCMC2005-01-20
23 Christensen, Douglas A.; Horch, Kenneth W.Accelerated dual-degree BS/MS program - experience with the first three yearsWe have initiated a pilot program that accelerates the studies of a small group of highly qualified students early in their college careers and allows them to earn both a bachelor's degree and a master's degree in about four years after starting college. It does this by introducing them early to res...Accelerated dual-degree program2004
24 Hansen, Mark S.; Healy, Lindsey J.; Johnson, Christopher R.; Capecchi, Mario R.; Keller, Charles; Jones, Greg M.Virtual histology of transgenic mouse embryos for high-throughput phenotyping.A bold new effort to disrupt every gene in the mouse genome necessitates systematic, interdisciplinary approaches to analyzing patterning defects in the mouse embryo. We present a novel, rapid, and inexpensive method for obtaining high-resolution virtual histology for phenotypic assessment of mouse ...Forkhead Transcription Factors; Paired Box Transcription Factors2006
25 Gesteland, Raymond F.; Atkins, John F.; Wills, Norma M.rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshiftBase pairing between the 3' end of 16S rRNA and mRNA is shown to be important for the programmed -1 frameshifting utilized in decoding the Escherichia coli dnaX gene. This pairing is the same as the Shine-Dalgarno pairing used by prokaryotic ribosomes in selection of translation initiators, but for ...Frameshifting; Escherichia coli; Binding Sites; Base Composition1994
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