Understanding how viruses manipulate ubiquitin ligases to avoid innate immunity

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Publication Type dissertation
School or College School of Medicine
Department Pathology
Author Silva, Ana Beatriz de Paula
Title Understanding how viruses manipulate ubiquitin ligases to avoid innate immunity
Date 2015-05
Description Soon after viruses enter the cell, they encounter host innate and adaptive immune responses that must be evaded. Restriction factors are proteins from the host innate immune response that impair the establishment of viral infection. Primate lentiviruses encode "accessory" proteins, which are not required for viral replication but essential to counteract host restriction factors. The primate lentivirus accessory proteins are Nef, Vif, Vpu, Vpr, and Vpx. The main mechanism used by these proteins to counteract restriction factors is the manipulation of the ubiquitin proteasome system. While Vpu usurps Cul1, Vpr and Vpx hijack Cul4A by associating with DCAF1. Through interaction with DCAF1, Vpx degrades SAMHD1, a protein that impairs viral reverse transcription in myeloid cell lineages. Vpr, on the other hand, induces poly-ubiquitination of Mus81 to activate the endonuclease complex SLX4com. SLX4com activation was suggested to induce cell cycle arrest in G2/M. SIVagm Vpr is homologous to HIV-1 Vpr in sequence and structure, but these two proteins have important functional differences. Unlike HIV-1 Vpr, SIVagm Vpr degrades SAMHD1 and induces G2 arrest but in a species-specific manner. In this work, we generated chimeric proteins between HIV-1 Vpr and SIVagm Vpr, in order to understand the structure-function relationships in these proteins. We showed a de novo ability to arrest cell cycle in human cells when iv the C-terminus of HIV-1 Vpr was grafted onto SIVagm Vpr. Using point mutants of HIV-1 Vpr, we were able to uncouple degradation of Mus81 from cell cycle arrest, suggesting that these two functions are independent. To study the amino acid residues of DCAF1 that are responsible for interactions with Vpr and Vpx, we generated a large array of point mutants. We demonstrated that Vpr and Vpx interact with DCAF1 using a similar region on DCAF1, but establishing interactions with different residues. We then used an inhibitor of the Neddylation pathway (MLN4924) to examine the role of CRUL in the abilities of accessory proteins to target host cell proteins. Our results demonstrate that inhibition of CRUL with MLN4924 did not affect downregulation of tetherin, suggesting that the trans-golgi entrapment is responsible for the observed effect.
Type Text
Publisher University of Utah
Subject MESH HIV-1; Acquired Immunodeficiency Syndrome ; Lentiviruses, Primate; Host-Pathogen Interactions; Viral Regulatory and Accessory Proteins; Carrier Proteins; vpr Gene Products, Human Immunodeficiency Virus; Ubiquitin-Protein Ligases; Proteolysis; Ubiquitination; Immunity, Innate; Cell Cycle; HeLa Cells; DNA-Binding Proteins; Genomic Instability; Sequence Alignment; trans-Golgi Network
Dissertation Institution University of Utah
Dissertation Name Doctor of Philosophy
Language eng
Relation is Version of Digital reproduction of Understanding How Viruses Manipulation Ubiquitin Ligases to Avoid Innate Immunity
Rights Management Copyright © Ana Beatriz de Paula e Silva 2015
Format Medium application/pdf
Format Extent 16,256,596 bytes
Source Original in Marriott Library Special Collections
ARK ark:/87278/s6gf590z
Setname ir_etd
ID 1426440
Reference URL https://collections.lib.utah.edu/ark:/87278/s6gf590z
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