Loss of RNA splicing factors sensitize zebrafish embryonic neural tissue to R-Loop-Mediated Ionizing radiation-induced apoptosis

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Publication Type dissertation
School or College School of Medicine
Department Oncological Sciences
Author Sorrells, Shelly Marie
Title Loss of RNA splicing factors sensitize zebrafish embryonic neural tissue to R-Loop-Mediated Ionizing radiation-induced apoptosis
Date 2015-12
Description Many cancers are curative with surgery, chemotherapy, radiotherapy, or a combination thereof. However, a subset of patients' cancers return and form a refractory cancer, which is often resistant to therapies, difficult to treat, and create a poor prognosis for the patient. Therefore, it is necessary to develop therapies that target refractory cancers. To this end, we utilize the forward and reverse genetics of the zebrafish to identify and validate mutations in genes that sensitize cells to ionizing radiation (IR)- induced apoptosis. We determine that loss-of-function mutations in ribonucleic acid (RNA) splicing factors cause an increase in IR-induced apoptosis, specifically in the neural tissue. Curiously, despite the ubiquitous requirement of RNA splicing in all cells, the neural tissue is the most sensitive to disruption of RNA splicing. Previous studies in yeast and cell culture have shown that the disruption of RNA processing, including RNA splicing, can cause R-loops, which are RNA:DNA hybrids that form when the nascent RNA base pairs to the complementary DNA strand. Aberrant R-loop accumulation causes an increase in DNA double-strand breaks (DSBs), and can be resolved by RNaseH1, an enzyme that specifically cleaves the RNA in an RNA:DNA hybrid. Here, we show that disruption of RNA splicing in the zebrafish causes R-loops and DNA DSBs. Expression of a conditional RNaseH1 mitigates the increase in DNA DSBs and sensitivity to IRinduced apoptosis. While we hypothesized that radiosensitivity was through a mechanism iv of increased p53 expression, we show that the increase in p53, seen in most RNA splicing mutants, is neither necessary nor sufficient for radiosensitivity. Our study further emphasizes the link between RNA splicing and the DNA damage response pathway. Furthermore, whereas previous single-cell models of R-loop formation have been unable to recognize tissue-specificity, the zebrafish provides a robust model to study why the loss of a cell-essential gene causes tissue-specific IRsensitivity. Future studies will be necessary to determine mechanisms of tissue-specific radiosensitivity, as well as determining whether targeting RNA splicing factors can be of clinical therapeutic value.
Type Text
Publisher University of Utah
Subject MESH Neoplasms; Apoptosis; R-Loop Structures; Caspase 3; Dose-Response Relationship, Radiation; Zebrafish; Radiotherapy; Tumor Suppressor Proteins; RNA Splicing; Tumor Suppressor Protein p53; Neoplasm Recurrence, Local; DNA Damage; Radiation Tolerance; Fluorescent Antibody Technique; Neurons; Genomic Instability; Radiation, Ionizing; Sensitivity and Specificity; Mutation; Gene Silencing
Dissertation Institution University of Utah
Dissertation Name Doctor of Philosophy
Language eng
Relation is Version of Digital version of Loss of RNA Splicing Factors Sensitize Zebrafish Embryonic Neural Tissue to R-Loop-Mediated Ionizing Radiation-Induced Apoptosis
Rights Management Copyright © Shelly Marie Sorrells 2015
Format Medium application/pdf
Format Extent 23,061,186 bytes
Source Original in Marriott Library Special Collections
ARK ark:/87278/s6qr9fvm
Setname ir_etd
ID 1432989
Reference URL https://collections.lib.utah.edu/ark:/87278/s6qr9fvm
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